Ahmed Hosny

 

Machine Learning + Medical Imaging

The Importance of Transparency and Reproducibility in Artificial Intelligence Research ↗

B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, MAQC Society Board, L Waldron, B Wang, C McIntosh, A Kundaje, CS Greene, MM Hoffman, JT Leek, W Huber, A Brazma, J Pineau, R Tibshirani, T Hastie, JPA Ioannidis, J Quackenbush & HJWL Aerts​

Arxiv Preprint 2020

The Dataset Nutrition Label: A Framework to Drive Higher Data Quality Standards ↗ ↗

A Hosny*, S Holland*​, S Newman, J Joseph​ & K Chmielinski​

Data Protection and Privacy: Data Protection and Democracy 2020

Artificial Intelligence for Global Health ↗

A Hosny & HJWL Aerts

Science 2019

Deep Learning to Assess Long-term Mortality from Chest Radiographs ↗

MT Lu, A Ivanov, T Mayrhofer, A Hosny, HJWL Aerts & U Hoffmann

JAMA Open 2019

Handcrafted Versus Deep Learning Radiomics for Prediction of Cancer Therapy Response ↗

A Hosny, HJWL Aerts & RH Mak

The Lancet Digital Health 2019

Deep Learning Predicts Lung Cancer Treatment Response from Serial Medical Imaging ↗

Y Xu, A Hosny, R Zeleznik, C Parmar, T Coroller, I Franko, RH Mak & HJWL Aerts

Clinical Cancer Research 2019

Artificial Intelligence in Cancer Imaging: Clinical Challenges and Applications ↗

WL Bi, A Hosny, MB Schabath, NJ Birkbak, A Mehrtash, ML Giger, T Allison, O Arnaout, C Abbosh, IF Dunn, RH Mak, RM Tamimi, CM Tempany, C Swanton, U Hoffmann, LH Schwartz, RJ Gillies, R Huang & HJWL Aerts

CA: A Cancer Journal for Clinicians 2019

ModelHub.AI: Dissemination Platform for Deep Learning Models ↗

A Hosny*, M Schwier*, C Berger, EP Örnek, M Turan, PV Tran, L Weninger, F Isensee, KH Maier-Hein, R McKinley, MT Lu, U Hoffmann, B Menze, S Bakas, A Fedorov & HJWL Aerts

Arxiv Preprint 2019

Artificial Intelligence in Radiology ↗

A Hosny, C Parmar, J Quackenbush, LZ Schwartz & HJWL Aerts

Nature Reviews Cancer 2018

Deep Learning for Lung Cancer Prognostication: A Retrospective Multi-Cohort Radiomics Study ↗

A Hosny, C Parmar, T Coroller, P Grossmann, R Zeleznik, A Kumar, J Bussink, RJ Gillies, RH Mak & HJWL Aerts

PLOS Medicine 2018

Data Analysis Strategies in Medical Imaging ↗

C Parmar, JD Barry, A Hosny, J Quackenbush & HJWL Aerts

Clinical Cancer Research 2018

Computational Radiomics System to Decode the Radiographic Phenotype ↗

JJM van Griethuysen, A Fedorov, C Parmar, A Hosny, N Aucoin, V Narayan, RGH Beets-Tan, JC Fillion-Robin, S Pieper & HJWL Aerts

Cancer Research 2017

 

3D Printing + Medical Imaging

Pre-procedural Fit-testing of Transcatheter Aortic Valve Replacement (TAVR) Valves Using Parametric Modeling and 3D Printing ↗

A Hosny, J Dilley, T Kelil, M Mathur, M Dean, JC Weaver & B Ripley

Journal of Cardiovascular Computed Tomography 2018

From Improved Diagnostics to Presurgical Planning: High Resolution Functionally Graded Multi-material 3D Printing of Biomedical Tomographic Datasets ↗

A Hosny, S Keating, JD Dilley, B Ripley, T Kelil, S Pieper, D Kolb, C Bader, AM Pobloth, M Griffin, R Nezafat, G Duda, EA Chiocca, JR Stone, JS Michaelson, MN Dean, N Oxman & JC Weaver

3D Printing & Additive Manufacturing 2018

Making Data Matter: Voxel Printing for the Digital Fabrication of Data across Scales and Domains ↗

C Bader, D Kolb, JC Weaver, S Sharma, A Hosny, J Costa & N Oxman

Science Advances 2018

A Novel Mixed Reality Navigation for Laparoscopic Surgery ↗

J Jayender, B Xavier, F King, A Hosny, D Black, S Pieper & A Tavakkoli

Medical Image Computing & Computer Assisted Intervention (MICCAI) 2018

3D Printing and Intraoperative Neuronavigation Tailoring for Skull Base Reconstruction after Extended Endoscopic Endonasal Surgery ↗

WI Essayed, P Unadkat, A Hosny, S Frisken, MS Rassi, S Mukundan Jr, JC Weaver, O Al-Mefty, AJ Golby & IF Dunn

Journal of Neurological Surgery 2018

Unlocking Vendor-Specific Tags: Three-Dimensional Printing of Echocardiography Data Sets ↗

A Hosny, T Shen, A Kuo, D Long, M Andrawes & JD Dilley

The Journal of Thoracic and Cardiovascular Surgery 2017

Use of a 3D-Printed Abdominal Compression Device to Facilitate CT Fluoroscopy-Guided Percutaneous Interventions ↗

Y Epelboym, PB Shyn, A Hosny, T Kelil, JFB Chick, NR Chauhan, B Ripley, RD Nawfel & FJ Scholz

American Journal of Roentgenology 2017

 

Design Technology

Multi-scale Modeling and Mechanical Performance Characterization of Stingray Skeleton-inspired Tessellations ↗

AK Jayasankar, R Seidel, A Hosny, JC Weaver, P Fratzl, J Chen & MN Dean

Journal of the Mechanics & Physics of Solids 2020

Bioinspired Design of Flexible Armor Based on Chiton Scales ↗

M Connors*, T Yang*, A Hosny, Z Deng, F Yazdandoost, H Massaadi, D Eernisse, R Mirzaeifar, MN Dean, JC Weaver, C Ortiz & L Li

Nature Communications 2019

Hybrid Living Materials: Digital Design and Fabrication of 3D Multimaterial Structures with Programmable Biohybrid Surfaces ↗

R Soo Hoo Smith*, C Bader*, S Sharma*, D Kolb, T Tang, A Hosny, F Moser, JC Weaver, CA Voigt & N Oxman

Advanced Functional Materials 2019

Mechanical Behavior of Idealized, Stingray-Skeleton-Inspired Tiled Composites as a Function of Geometry and Material Properties ↗

AK Jayasankar, R Seidel, J Naumann, L Guiducci, A Hosny, P Fratzl, JC Weaver, JWC Dunlop & MN Dean

Journal of the Mechanical Behavior of Biomedical Materials 2017

Material Analytics: Knowledge from Mechanical Behaviour Data ↗

A Hosny

Master of Design Studies Thesis - Harvard Graduate School of Design 2015

Voxel Beam ↗

A Hosny, N Jacobson & Z Seibold

Emerging Experience in Past, Present and Future of Digital Architecture, Proceedings of the 20th International Conference of the Association for Computer-Aided Architectural Design Research in Asia CAADRIA 2015

Robotic Bead Rolling ↗

J Friedman, A Hosny & A Lee

Robotic Fabrication in Architecture, Art and Design 2014

 

Under Review

Artificial Intelligence in Radiation Oncology

E Huynh, A Hosny, C Guthier, D Bitterman, B Kann, S Petit, HJWL Aerts & RH Mak

Deep Learning-based Computed Tomography Radiomics for Non-small Cell Lung Cancer Histopathologic Classification

TL Chaunzwa, A Hosny, Y Xu, A Shafer, N Diao, M Lanuti, DC Christiani, RH Mak & HJWL Aerts

 

Editorials About my Work

Cancer Informatics in 2018: The Mysteries of the Cancer Genome Continue to Unravel, Deep Learning Approaches the Clinic, and Passive Data Collection Demonstrates Utility ↗

JL Warner & D Patt

International Medical Informatics Association (IMIA) Yearbook of Medical Informatics 2019

Fit-Testing Transcatheter Aortic Valve Replacements with 3-D Printing ↗

J Abbasi

The Journal of the American Medical Association (JAMA) 2019

Ultrasound-Derived Three-Dimensional Print Models Made Ultrasimply ↗

WJ Mauermann & JM Matsumoto

The Journal of Thoracic and Cardiovascular Surgery 2018

FAIR-Radiomics Infrastructure

Z Shi, A Fedorov, A Hosny, C Parmar, HJWL Aerts, A Dekker & L Wee

19th International Conference on the use of Computers in Radiation Therapy (ICCR) 2019

Non-invasive Tracking of Cancer Evolution using Deep Learning Longitudinal Image Analysis ↗

Y Xu, A Hosny, T Coroller, R Zeleznik, RH Mak & HJWL Aerts

Radiological Society of North America (RSNA) Scientific Assembly and Annual Meeting 2018

Deep Learning for Automated Quantification of Tumor Phenotypes ↗

A Hosny, T Coroller, P Grossmann, C Parmar, R Zeleznik, A Kumar, J Bussink, RJ Gillies, RH Mak & HJWL Aerts

American Association of Physicists in Medicine (AAPM) Annual Meeting 2018

Tracking Imaging Phenotypes with Deep Learning for Survival and Treatment Response Prediction ↗

Y Xu, A Hosny, T Coroller, R Zeleznik, RH Mak & HJWL Aerts

American Association of Physicists in Medicine (AAPM) Annual Meeting 2018

Quantitative Shape Analysis of Intertesseral Joints in Tessellated Calcified Cartilage of Sharks and Rays (Elasmobranchs) ↗ ↗

R Seidel, A Hosny, D Knötel, P Fratzl, D Baum, JC Weaver & MN Dean

5th International Conference on Multifunctional, Hybrid & Nanomaterials 2017

Bricks and Anchors: Strategies for Load Bearing and Muscle Attachment in the Cartilage Skeletons of Sharks and Rays ↗

MN Dean, A Hosny, D Knoetel, R Zeleznik, R Seidel, A Luger, D Wainwright, M Blumer & D Baum

111th Annual Meeting of the German Zoological Society 2017

Biological and Bio-inspired Flexible Armor Based on Chiton’s Girdle Scales ↗

L Li, M Connors, A Hosny, D Earnisse, M Dean, JC Weaver & C Ortiz

The Minerals, Metals, and Materials Society (TMS) Annual Meeting & Exhibition 2017

Development, Ultrastructure and Mechanics of Shark and Ray Tessellated Cartilage: Nature’s Curious Alternative to Bone

MN Dean, R Seidel, A Jayasankar, M Blumer, A Hosny, JC Weaver, D Knoetel, D Baum & P Fratzl

Symposium: FishBone - Advancing the Use of Fish for Skeletal Research. European Calcified Tissue Society (ECTS) Meeting 2017

Bricks and Anchors: Strategies for Load Bearing and Muscle Attachment in the Cartilage Skeletons of Sharks and Rays ↗

MN Dean, A Hosny, D Knoetel, R Seidel, AM Luger, D Wainwright, M Blumer & D Baum

The Society for Integrative and Comparative Biology (SICB) Annual Meeting 2017

CellExpress: On-Demand Web-Based Cell Microscopy Image Analysis ↗

A Hosny, S Pieper & S Baumann

Society of Biomolecular Imaging & Informatics - High Content 3rd Annual Conference 2016

Biological Strategies for Fatigue and Wear Avoidance: Lessons from Stingray Skeletons and Teeth ↗

MN Dean, A Hosny, R Seidel & D Baum

3rd International Conference on BioTribology 2016 & Tomography for Scientific Advancement symposium (ToScA) 2016

Understanding the Tiling Rules of the Tessellated Mineralized Endoskeleton of Sharks and Rays ↗

D Knötel, R Seidel, A Hosny, JC Weaver, D Baum & MN Dean

Euro Bio-inspired Materials 2016

Mechanical Behavior of Bioinspired Tiled Composites as a Function of Geometry and Material Properties ↗

AK Jayasankar, L Guiducci, A Hosny, R Seidel, P Fratzl, J Dunlop, JC Weaver & MN Dean

Euro Bio-inspired Materials 2016

Three-Dimensional Printing of an Abdominal Compression Device to Facilitate CT-Fluoroscopy-Guided Interventional Procedures ↗

Y Epelboym, P Shyn, T Kelil, J Chick, N Chauhan, B Ripley, A Hosny & F Scholz

Journal of Vascular and Interventional Radiology 2015

Nature’s Puncture Resistant Flexible Composites: Design Lessons from Shark Skeletons

R Seidel, AM Luger, D Knoetel, M Schotte, D Baum, M Blumer, L Li, A Hosny, JC Weaver & MN Dean

HFSP Annual Awardees Meeting 2015

Robotic Bead Rolling ↗

J Friedman, A Hosny & A Lee

Projects of the 34th ACADIA Annual Conference 2014

Artificial Intelligence in Radiation Oncology

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Research Showcase, Department of Radiation Oncology
Brigham and Women's Hospital/Dana Farber Cancer Institute. Boston, 27 June 2019

Artificial Intelligence in Radiology

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Physics Seminar, Department of Radiation Oncology
Massachusetts General Hospital. Boston, 9 October 2018

Convolutional Neural Networks

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Certificate Series Session 3: Convolutional Neural Networks
Self Assessment Modules (SAM) Joint Imaging-Therapy Scientific Symposium
American Association of Physicists in Medicine (AAPM) Annual Meeting. Nashville, 1 August 2018

Deep Learning Intuition

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Certificate Series Session 2: Machine Learning for Radiomics
Self Assessment Modules (SAM) Joint Imaging-Therapy Scientific Symposium
American Association of Physicists in Medicine (AAPM) Annual Meeting. Nashville, 1 August 2018

Deep Learning for Automated Quantification of Tumor Phenotypes

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Computed Tomography II - Imaging Scientific Session
American Association of Physicists in Medicine (AAPM) Annual Meeting. Nashville, 1 August 2018

Modelhub: Plug & Predict Solutions for Reproducible AI Research

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National Cancer Institute (NCI) Containers and Workflows Interest Group Seminar. Boston, 13 July 2018

Deep Learning Opportunities in Cancer Imaging

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ReWork Deep Learning in Healthcare Summit. Boston, 24-25 May 2018

From physical to digital and back: How 3D modeling and additive manufacturing reveal nature's design rules

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International Congress of Vertebrate Morphology. Washington DC, 29 June – 3 July 2016

Methodology and Aparatus for Simulation of Medical Devices ↗

A Hosny, B Ripley, T Kelil, J Dilley & J Weaver

International Application No. PCT/US2017/060523, filed August 11, 2017
U.S. Provisional Pat. Ser. No. 62/419268, filed November 8, 2016

Flexible Scaled Protective Systems

L Li, A Hosny, M Connors & C Ortiz

U.S. Provisional Pat. Ser. No. 62/357580, filed July 1, 2016